Nutrition and vitamin deficiencies

Nutrition and vitamin deficiencies: the complete clinical approach to Nutrition and vitamin deficiencies: definition; causes and risk factors in our setting (including HIV, TB, malaria.

After reading this note you will be able to recognise, investigate and initiate appropriate management of common nutritional and vitamin deficiency states seen in Kenyan clinical rotations, while knowing where to verify doses and local protocols in the Kenya MoH guideline and your hospital formulary.

Definition

Nutrition and vitamin deficiencies refer to states in which intake, absorption, transport, storage or utilisation of macronutrients (protein, carbohydrate, fat) or micronutrients (vitamins, minerals) is insufficient to meet the body’s metabolic demands, leading to clinical signs, biochemical abnormalities and functional impairment.

Anatomy and physiology you need

SystemKey structures/functions relevant to nutrition
Gastro‑intestinal tractOral cavity, stomach acid, pancreatic enzymes, brush‑border transporters, ileal bile acid re‑absorption
LiverSynthesis of transport proteins (e.g., RBP, transcobalamin), storage of fat‑soluble vitamins, gluconeogenesis
PancreasExocrine enzymes for fat digestion, endocrine insulin/glucagon for carbohydrate utilisation
KidneysRe‑absorption of water‑soluble vitamins, activation of vitamin D
Bone marrow & muscleSites of protein synthesis, iron incorporation, vitamin‑dependent enzymatic reactions
Immune systemLymphocyte proliferation, oxidative burst (vitamin C, E), cytokine modulation (vitamin D)

Causes and risk factors

  • Inadequate dietary intake – poverty, food insecurity, restrictive diets, alcoholism.
  • Malabsorption – chronic diarrhoea (TB, HIV enteropathy, malaria), celiac disease, pancreatic insufficiency, post‑surgical resections.
  • Increased requirements – pregnancy, lactation, severe infection (TB, HIV, malaria), burns, sickle‑cell crises.
  • Losses – chronic vomiting, diarrhoea, dialysis, haemodialysis, extensive wounds.
  • Drug‑induced – anticonvulsants (vitamin D), isoniazid (vitamin B6), antiretrovirals (folate).
  • Chronic diseases – HIV/AIDS, pulmonary TB, malaria, rheumatic fever (inflammation‑driven catabolism), sickle‑cell disease (hemolysis → folate loss).
  • Socio‑economic & environmental – rural subsistence farming, limited access to fortified foods, seasonal famines.

Pathophysiology

Protein‑energy malnutrition → inadequate amino acids → ↓ synthesis of transport proteins & immune mediators → muscle wasting, oedema, impaired immunity.

Vitamin A deficiency → ↓ retinal pigment & mucosal integrity → keratinisation of conjunctiva → night blindness, xerophthalmia.

Thiamine (B1) deficiency → ↓ pyruvate dehydrogenase activity → accumulation of lactate → beriberi (wet → high‑output cardiac failure; dry → peripheral neuropathy).

Riboflavin (B2) deficiency → ↓ flavoprotein co‑enzymes → impaired fatty‑acid oxidation → cheilosis, glossitis.

Niacin (B3) deficiency → ↓ NAD/NADP → impaired oxidative metabolism → pellagra (dermatitis, diarrhoea, dementia).

Pyridoxine (B6) deficiency → ↓ aminotransferases & neurotransmitter synthesis → peripheral neuropathy, sideroblastic anaemia.

Folate & Vitamin B12 deficiency → ↓ DNA synthesis in rapidly dividing cells → megaloblastic anaemia, glossitis, neuro‑psychiatric changes (B12).

Vitamin C deficiency → ↓ collagen hydroxylation → fragile capillaries → petechiae, poor wound healing, scurvy.

Vitamin D deficiency → ↓ calcium‑phosphate absorption → secondary hyperparathyroidism → osteomalacia, rickets.

Vitamin E deficiency → ↓ antioxidant protection of membranes → hemolytic anaemia, neuropathy (rare, seen in fat‑malabsorption).

Mineral deficiencies (iron, iodine, zinc) follow similar patterns of impaired synthesis or hormone production.


The above causal arrows illustrate how a primary nutritional insult translates into the characteristic clinical picture.

Clinical features

AspectQuestions to askWhy it matters
GeneralWeight trend (loss, gain, plateau); appetite changes; dietary intake (type, frequency, food security); recent illness or hospitalisation; socioeconomic factors; alcohol or substance useWeight loss or poor intake is the first clue to malnutrition; socioeconomic constraints are common drivers in Kenya.
Gastro‑intestinalNausea, vomiting, diarrhoea, constipation, dysphagia, odynophagia, abdominal pain, bloating, recent bariatric surgery or intestinal resectionChronic diarrhoea or malabsorption syndromes (e.g., tropical sprue, HIV enteropathy) directly reduce nutrient absorption.
Metabolic / EndocrinePolyuria, polydipsia, heat intolerance, cold intolerance, menstrual irregularities, libido changes, fatigue, muscle weaknessThyroid disorders, diabetes and adrenal insufficiency can mimic or aggravate nutritional deficits.
Specific vitamin‑relatedNight‑time visual disturbances, peripheral neuropathy, paresthesias, muscle cramps, easy bruising, gum bleeding, hair loss, skin changes (hyperpigmentation, scaling), oral ulcerations, sore tongue, poor wound healingClassic manifestations of deficiencies (e.g., vitamin A – night blindness; B‑complex – neuropathy; C – gum disease; D – bone pain).
Infection‑relatedHIV status, TB treatment history, malaria episodes, recurrent infections, sickle‑cell crises, rheumatic fever episodesChronic infections increase catabolism and nutrient loss; some (e.g., TB) cause specific micronutrient depletion.
Medication historyUse of antiretrovirals, anti‑TB drugs, anticonvulsants, diuretics, steroids, metformin, oral contraceptivesCertain drugs interfere with absorption or increase excretion of vitamins (e.g., isoniazid → B6 depletion).
FunctionalAbility to perform ADLs, exercise tolerance, school/work attendanceFunctional decline often precedes overt biochemical abnormalities.

Examination findings and rationale

FindingWhat it indicatesPathophysiologic link
Weight loss / low BMIUndernutrition, possible protein‑energy malnutrition (PEM)Negative energy balance, loss of lean body mass.
Muscle wasting (temporal, clavicular, quadriceps)Protein deficiency, chronic catabolismReduced synthesis of muscle proteins, increased proteolysis.
Skin changes – dry, thin, hyperpigmented, “flaky paint” dermatitisVitamin A, C, B2, niacin deficiencyImpaired epithelial maintenance, antioxidant deficiency.
Hair changes – thinning, loss, “flag sign” (coarse, pigmented)Protein, zinc, biotin deficiencyKeratin synthesis requires adequate protein and trace elements.
Glossitis, angular cheilitisB‑complex (B2, B3, B6, B12, folate) deficiencyRapidly dividing mucosal cells need folate/B‑vitamins.
Peripheral neuropathy – stocking‑glove loss of sensation, diminished reflexesB1, B6, B12 deficiencyVitamins required for neuronal metabolism and myelin formation.
Bleeding gums, petechiae, easy bruisingVitamin C deficiencyImpaired collagen synthesis → fragile capillaries.
Scleral icterus, jaundiceFat‑soluble vitamin malabsorption (A, D, E, K) secondary to cholestasisBile needed for absorption of these vitamins.
Bone tenderness, deformities, muscle painVitamin D deficiency, calcium deficiencyImpaired mineralisation of bone matrix.
Cardiovascular signs – tachycardia, hypotension, peripheral edemaSevere protein deficiency (hypoalbuminemia)Reduced oncotic pressure → third‑spacing.
Neurological signs – confusion, ataxia, seizuresThiamine (B1) deficiency (Wernicke’s) or severe B12 deficiencyEnergy failure in CNS neurons.
Palmar erythema, spider angiomasChronic liver disease with fat‑soluble vitamin lossImpaired synthesis and storage of vitamins.

Differential diagnosis

ConditionPoints toward itHow it separates from nutritional deficiency
Protein‑energy malnutrition (PEM)Low BMI, muscle wasting, edema, history of food insecurityImproves with caloric repletion; labs show low albumin, pre‑albumin without specific vitamin abnormalities.
Iron‑deficiency anemiaFatigue, pallor, pica, microcytic anemiaIron studies (low ferritin, low serum iron) differentiate; not associated with classic vitamin‑specific signs.
Sickle‑cell disease crisisKnown sickle‑cell, vaso‑occlusive pain, hemolysisHemoglobin electrophoresis positive; crises episodic, not chronic malabsorption.
Chronic kidney diseaseEdema, hypertension, reduced GFR, uremic symptomsLabs show elevated creatinine, altered electrolytes; vitamin D deficiency secondary to renal conversion loss.
HIV‑associated wastingHIV positive, opportunistic infections, ART side‑effectsCD4 count low, viral load high; wasting may be multifactorial but ART‑related B6 depletion is a clue.
Tuberculosis (active)Chronic cough, night sweats, weight loss, positive sputumRadiographic infiltrates, positive GeneXpert; TB can cause B6 loss but also systemic catabolism.
Malabsorption syndromes (celiac, tropical sprue, chronic pancreatitis)Steatorrhea, abdominal pain, weight loss, specific nutrient deficienciesStool fat excess, duodenal biopsy (celiac) or response to antibiotics (tropical sprue).
Chronic liver disease (cirrhosis)Jaundice, ascites, spider angiomas, alcohol useCoagulopathy, elevated transaminases; fat‑soluble vitamin loss secondary to cholestasis.

Investigations

TestWhat it answersInterpretation
BMI, MUACNutritional statusBMI <18.5 or MUAC <23 cm = undernutrition
Serum albumin / pre‑albuminProtein reservesLow values suggest protein deficiency, but also inflammation
Complete blood countAnemia type, infectionMicrocytic → iron; macrocytic → B12/folate; leukocytosis → infection
Serum electrolytes, renal functionCatabolic state, organ involvementHyponatremia, elevated creatinine may accompany severe malnutrition
Serum vitamin levels (A, D, B12, folate, thiamine, pyridoxine, C)Specific micronutrient statusDeficient if below reference range; note acute phase may lower levels
Urine organic acidsThiamine, riboflavin deficiencyElevated lactate, α‑ketoglutarate suggest B1 loss
Stool analysis (fat, parasites)Malabsorption, tropical infectionsFat >7 g/24 h = steatorrhoea; ova/cysts indicate parasitic disease
Chest X‑ray / sputum GeneXpertActive TBCavitary lesions or positive MTB PCR confirm TB
HIV test (4th generation)HIV statusPositive → higher risk of wasting and specific deficiencies
Liver function testsFat‑soluble vitamin absorptionLow albumin, raised ALP, bilirubin indicate cholestasis
Bone mineral density (if available)Chronic vitamin D/calcium deficiencyT‑score ≤‑2.5 = osteopenia/osteoporosis

Diagnosis and severity

CategoryCriteriaSeverity grading
Protein‑energy malnutritionBMI <18.5 kg/m² or MUAC <23 cm plus at least two clinical signs (muscle wasting, edema, low albumin)Mild: BMI 16‑18.5, no edema; Moderate: BMI 14‑16, mild edema; Severe: BMI <14 or presence of marked edema/ascites
Micronutrient deficiencySpecific serum level below laboratory reference and compatible clinical signsMild: level 0.8‑1.0 ×  lower limit, isolated symptom; Moderate: 0.5‑0.8 ×  lower limit, multiple symptoms; Severe: <0.5 ×  lower limit, life‑threatening manifestations (e.g., Wernicke’s, severe anemia)
Combined deficiencyTwo or more micronutrient levels deficient or protein‑energy malnutrition plus micronutrient lossGraded by the most severe component; management addresses both.

Clinical decision:

  • Confirm the primary driver (energy deficit vs. specific vitamin loss).
  • Stage severity to guide urgency of re‑feeding, need for inpatient monitoring (electrolyte shifts, re‑feeding syndrome), and whether parenteral supplementation is required.

Key safety points:

  • In severe PEM, start with low‑calorie feeds and monitor electrolytes (especially phosphate, potassium, magnesium).
  • For thiamine deficiency, give parenteral thiamine before glucose infusion to avoid precipitating Wernicke’s.
  • Vitamin D repletion in renal disease should be with active analogues; monitor calcium and phosphate.

This framework equips the junior doctor to recognise, differentiate, and stage nutrition‑related presentations common in Kenyan clinical rotations, and to initiate safe, evidence‑based management.

Management

StepWhat to doRationale / safety notes
Immediate stabilisation• Assess airway, breathing, circulation; give O₂ if hypoxic. <br>• Correct severe electrolyte or fluid loss with isotonic IV fluids. <br>• Treat hypoglycaemia with dextrose bolus (if unconscious).Prevents life‑threatening shock, cerebral oedema and cardiac arrhythmia.
Re‑feeding• Start low‑calorie enteral feeding (≈10 kcal/kg/day) and increase by 10–20 % daily. <br>• Monitor for re‑feeding syndrome (phosphate, magnesium, potassium).Gradual increase avoids sudden insulin surge and electrolyte shifts.
Micronutrient replacement• Give oral/IV multivitamin‑mineral complexes (B‑complex, vitamin C, vitamin D, zinc, selenium). <br>• Specific therapy: <br> – Vitamin A (for xerophthalmia, measles‑related deficiency) – give as oral/IM retinol ester. <br> – Vitamin B1 (thiamine) – give before glucose infusion to prevent Wernicke’s. <br> – Vitamin B12 (cobalamin) – give intramuscular cyanocobalamin in pernicious anaemia or malabsorption. <br> – Folate – give oral folic acid in macrocytic anaemia or pregnancy.Replace the deficient vitamin before giving carbohydrate loads; avoid precipitating neurologic injury.
Treat underlying disease• Antiretroviral therapy for HIV, anti‑TB drugs, antimalarials, disease‑modifying agents for rheumatic disease, hydroxyurea for sickle cell.Improves appetite, absorption and reduces catabolic drive.
Nutritional counselling• Energy‑dense, locally available foods (maize, beans, groundnuts, leafy greens). <br>• Small frequent meals, fortified porridges, use of oil or butter for added calories.Sustainable long‑term correction; respects cultural diet.
Monitoring• Daily weight, fluid balance, vitals. <br>• Electrolytes (phosphate, potassium, magnesium) every 24 h for first 5 days. <br>• Haematology (Hb, MCV) weekly; serum vitamin levels where available.Detects re‑feeding syndrome, treatment response, and need for dose adjustment.
Follow‑up• Outpatient review at 2 weeks, then monthly until nutritional targets met. <br>• Repeat full blood count and relevant vitamin assays at 3 months.Ensures complete recovery and identifies late complications.
Contra‑indications / safety• High‑dose vitamin A in pregnancy (teratogenic). <br>• Thiamine in alcoholic patients – give before glucose. <br>• Intravenous iron in active infection without antibiotics.Avoid iatrogenic harm; respect drug‑disease interactions.

Complications and prognosis

  • Re‑feeding syndrome – hypophosphataemia, arrhythmias, respiratory failure; prevent with slow caloric increase and electrolyte monitoring.
  • Neurologic sequelae – irreversible Wernicke’s encephalopathy if thiamine omitted; peripheral neuropathy from B12 deficiency may persist.
  • Ophthalmic damage – xerophthalmia and corneal ulceration if vitamin A not promptly replaced.
  • Hematologic effects – persistent macrocytic anaemia, pancytopenia if folate/B12 deficiency untreated.
  • Growth retardation in children; impaired wound healing and immune function in adults.
  • Prognosis – excellent when deficiency identified early and treated appropriately; delayed treatment leads to higher morbidity and mortality, especially in HIV/TB co‑infection.

High‑yield exam points

  • Look‑alike conditions: Kwashiorkor vs. marasmus (edema vs. severe wasting); pellagra vs. photosensitive drug reaction (dermatitis, diarrhea, dementia).
  • Common wrong first step: Giving glucose bolus before thiamine in an alcoholic or malnourished patient – precipitates Wernicke’s.
  • Examiner bedside questions:
    • “What vitamin deficiency explains the patient’s peripheral neuropathy and macrocytosis?”
    • “Why do you start feeding at 10 kcal/kg rather than full requirement?”
    • “Which electrolyte do you monitor most closely in the first 72 h of re‑feeding?”
    • “How would you differentiate vitamin A deficiency from measles‑related conjunctivitis?”

Clinical case

Case: A 34‑year‑old man with newly diagnosed HIV (CD4 150 cells/µL) presents with 3 weeks of progressive weakness, confusion, and a “stiff‑leg” gait. He has a thin habitus, dry scaly rash on the hands, and a blood pressure of 100/60 mmHg. Labs show Hb 9 g/dL, MCV 112 fL, serum phosphate 0.6 mmol/L (low), and normal glucose.

Questions

  1. What is the most likely vitamin deficiency?

Answer: Thiamine (vitamin B1) deficiency – classic triad of confusion, ataxia, and cardiac dysfunction (wet beriberi) in a malnourished HIV patient.

  1. What immediate treatment should be given before any glucose?

Answer: Intravenous thiamine (B1) – prevents precipitating Wernicke’s encephalopathy when glucose is later administered.

  1. Which long‑term nutritional strategy will best prevent recurrence?

Answer: Structured, energy‑dense diet with regular multivitamin‑mineral supplementation and ART to improve immune status and appetite.


Practice questions

Question 1

A 6‑month‑old infant from a rural Kenyan village is brought with irritability, vomiting, and a swollen, “floppy” abdomen. The child is lethargic, has a protuberant belly, and the skin shows “cracked” patches on the elbows. What is the next best step?

A. Start high‑dose vitamin A oral therapy
B. Give oral rehydration solution only
C. Begin low‑calorie enteral feeding with thiamine supplementation
D. Administer intravenous antibiotics

Answer: C. Begin low‑calorie enteral feeding with thiamine supplementation
Explanation: The picture is classic for kwashiorkor; thiamine must be given before carbohydrate loads to avoid Wernicke’s, and feeding should start slowly to prevent re‑feeding syndrome.

Question 2

A 45‑year‑old woman with sickle cell disease presents with painful leg ulcers, night blindness, and dry, scaly skin. Which deficiency explains all three findings?

A. Vitamin D
B. Vitamin A
C. Vitamin C
D. Zinc

Answer: B. Vitamin A
Explanation: Vitamin A deficiency causes night blindness, xerosis cutis, and impairs epithelial repair leading to ulceration.

Question 3

A patient on long‑term isoniazid therapy for TB develops peripheral neuropathy. Which supplement should be added to prevent worsening?

A. Vitamin B12
B. Vitamin B6 (pyridoxine)
C. Folic acid
D. Vitamin C

Answer: B. Vitamin B6 (pyridoxine)
Explanation: Isoniazid interferes with pyridoxine metabolism; supplementation prevents neuropathy.

Question 4

A 28‑year‑old man with malaria is found to have haemolytic anaemia, jaundice, and low serum folate. Which of the following is the most appropriate micronutrient intervention?

A. Oral folic acid daily
B. Intravenous vitamin B12 weekly
C. High‑dose vitamin C infusion
D. No supplementation needed

Answer: A. Oral folic acid daily
Explanation: Folate is depleted in malaria‑related haemolysis; replacement aids erythropoiesis.

Question 5

During re‑feeding of a severely malnourished patient, serum phosphate falls dramatically. Which action is correct?

A. Stop feeding completely for 48 h
B. Increase carbohydrate load to raise insulin
C. Give intravenous phosphate while continuing gradual feeding
D. Switch to a high‑fat, low‑carbohydrate diet only

Answer: C. Give intravenous phosphate while continuing gradual feeding
Explanation: Re‑feeding syndrome is managed by correcting phosphate deficits while maintaining the feeding plan; stopping feeding worsens catabolism.

Drafted with AI assistance from standard references and reviewed for structure. Check details against your lecture notes and the Kenya MoH guideline.

More in General internal medicine

All study notes

Compiled by Ompath Study · Ompath Study · shared for MBChB students at Mount Kenya University and other universities.